PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01376g00007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 71aa MW: 7895.4 Da PI: 10.36

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01376g00007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	78	1.6e-24	13	65	1	53
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee 53 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l+ l++e+ Peinf101Scf01376g00007.1 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQLLSKEK 65 7**********************************************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.135	12	71	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-23	13	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MKESGRKQGV ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQL 60 LSKEKPIPKM I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-22	9	61	7	59	LOB family transfactor Ramosa2.1
5ly0_B	2e-22	9	61	7	59	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	3e-70	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019260359.1	6e-37	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	6e-35	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A314LC49	1e-35	A0A314LC49_NICAT; Lob domain-containing protein 4
STRING	Solyc11g045530.1.1	1e-35	(Solanum lycopersicum)
STRING	PGSC0003DMT400022286	1e-35	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-37	LOB domain-containing protein 4