PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01380g00033.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 213aa MW: 23926.7 Da PI: 6.7657

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01380g00033.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.3	2.2e-37	10	93	1	84
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rr+C++dC+lapyfpa+qpk f+n+h+lFG+sn+lk+lk+l++++++ am+s++y+A+ar + PvyG+v+ i++l Peinf101Scf01380g00033.1 10 ACAACKYQRRRCTSDCPLAPYFPADQPKMFQNAHRLFGVSNILKILKQLDPSQKKVAMKSIIYQANARDKHPVYGCVAEIQNLF 93 7*******************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.847	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-36	10	92	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MTLKGGTSQA CAACKYQRRR CTSDCPLAPY FPADQPKMFQ NAHRLFGVSN ILKILKQLDP 60 SQKKVAMKSI IYQANARDKH PVYGCVAEIQ NLFYAAAYNN NTTFVDPKEN NVVNSLWIQQ 120 SYGNNACNNN QMILQSHLPA SQSISVPQDV TQDYDELHPF FDTIDDRQSY IDSKEAYDSS 180 SESSLKDTRH SVEHVAENEL KNAAACFTLT SVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-27	6	92	7	93	LOB family transfactor Ramosa2.1
5ly0_B	8e-27	6	92	7	93	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022852660.1	3e-90	LOB domain-containing protein 27-like
TrEMBL	A0A2P5WJP0	2e-74	A0A2P5WJP0_GOSBA; Uncharacterized protein
STRING	POPTR_0012s07390.1	1e-70	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-46	LOB domain-containing protein 27