PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01438g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 214aa    MW: 22513.3 Da    PI: 10.0121
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01438g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.78.5e-3818101285
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                               a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++   ++s  ++s+s
  Peinf101Scf01438g00001.1  18 AVKKAPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPATFStV-SNSLINSSTS 101
                               789******************************************************************66631.2222222211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3424112IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6752478IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSTSVEGNGA AANNGVLAVK KAPAKDRHSK VDGRGRRIRM PIVCAARVFQ LTRELGHKSD  60
GQTIEWLLRQ AEPSIIAATG TGTIPATFST VSNSLINSST STVSAPLDHK SAPFLLGKRL  120
RTEEDGEGHK DVVGPTAGFW AVPARPDYGQ VWSFAAAPSQ DMGALNSVNS RFMGEVSGAG  180
RVGNYFPIAQ GHLNLLASLS GPVQPGRRDD DGGH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2394351e-59AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence.
GenBankGQ4963331e-59GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds.
GenBankHG9754401e-59HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-59HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233810.11e-101TCP transcription factor 15
RefseqXP_015062295.11e-101transcription factor TCP7
SwissprotQ9FMX23e-74TCP7_ARATH; Transcription factor TCP7
TrEMBLG3BGV51e-100G3BGV5_SOLLC; TCP transcription factor 15
STRINGSolyc01g008230.2.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.18e-67TCP family protein