PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01460g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 172aa    MW: 19134.6 Da    PI: 8.9137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01460g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-162675255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               ykG+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  Peinf101Scf01460g00001.1 26 VYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDIAVYYLRG 75
                              69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-272585IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-182685IPR016177DNA-binding domain
PfamPF008472.3E-102675IPR001471AP2/ERF domain
SMARTSM003803.5E-342690IPR001471AP2/ERF domain
PROSITE profilePS5103222.012684IPR001471AP2/ERF domain
PRINTSPR003671.4E-72738IPR001471AP2/ERF domain
CDDcd000181.51E-242786No hitNo description
PRINTSPR003671.4E-74965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEVDGGAAVV HGGGGCCTRK RNNERVYKGI RMRKWGKWVA EIREPNKRSR IWLGSYSSPV  60
AAARAYDIAV YYLRGPSAAR LNFPELVVNG DSCGLSELSA ASIRKKAIEV GSTVDAIQNS  120
LAIRDHDHDH GHDQKRKHGN ESPARLKACW FQEKPDLNLK PEPEDTELEL VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1227841572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361741.12e-76PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotO221745e-46ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLM1D7U54e-75M1D7U5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000845066e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-48DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]