PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01463g01004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 194aa    MW: 22885.7 Da    PI: 8.1988
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01463g01004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.2e-123479148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT++Ed++l+ +v ++G ++W+  a+  g  Rt++ +k++w++++
  Peinf101Scf01463g01004.1 34 KGPWTEQEDLQLAFYVDLFGDRRWDFLAKVSG--RTDNKIKNYWRTHM 79
                              79************************999997..***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-162786IPR009057Homeodomain-like
PROSITE profilePS5129418.5612983IPR017930Myb domain
SuperFamilySSF466892.62E-123083IPR009057Homeodomain-like
SMARTSM007179.7E-103381IPR001005SANT/Myb domain
PfamPF002497.4E-113478IPR001005SANT/Myb domain
CDDcd001674.26E-73679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
VTQKKTSYLR SGQLKRGKEQ AEKRAKMVQQ EMRKGPWTEQ EDLQLAFYVD LFGDRRWDFL  60
AKVSGRTDNK IKNYWRTHMR KKAQEERKNR ASIMSPSSSF SNSSSFFSNS PDVDFMPITE  120
NNERNFYDTV GDQEKGNSAK VFSMDEIWKD IELSECKQIT PSPIWDYCPD SLWITDEEEN  180
KMFPLISKHN HLSF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770621.11e-63PREDICTED: transcription factor MYB48-like
RefseqXP_016514046.11e-63PREDICTED: transcription factor MYB48-like
SwissprotQ53NK62e-26MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A1S4DKY03e-62A0A1S4DKY0_TOBAC; transcription factor MYB48-like
TrEMBLA0A1U7W0923e-62A0A1U7W092_NICSY; transcription factor MYB48-like
STRINGXP_009770621.14e-63(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.36e-26myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]