PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01468g07025.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 226aa    MW: 25723 Da    PI: 9.087
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01468g07025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986e-31148205158
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                               ldDgy+WrKYGqK+vk++++prsYYrCt+ +C vkk+ver a+dp++v++tYeg+H h
  Peinf101Scf01468g07025.1 148 LDDGYKWRKYGQKVVKDTQHPRSYYRCTQYNCGVKKRVERLADDPRMVITTYEGRHVH 205
                               59******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-32133206IPR003657WRKY domain
SuperFamilySSF1182907.59E-28140206IPR003657WRKY domain
PROSITE profilePS5081128.885143208IPR003657WRKY domain
SMARTSM007741.1E-34148207IPR003657WRKY domain
PfamPF031063.4E-24149205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MLTTSQAMLS QSLLEDQDYM STQPGTFSFP PNNNMGSLPF GCNQALKTLF TIIPPSFADP  60
LNESTAPTQK EDLTNFLFGG SQLFLPRSSP NWACKGVTMM SSNNKRSGVG DHHLGVSAIN  120
KMKKIKSSRM NVREPRFSFK TMSDVDVLDD GYKWRKYGQK VVKDTQHPRS YYRCTQYNCG  180
VKKRVERLAD DPRMVITTYE GRHVHYPSHD DEEDSQASSQ HVFLYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27138205774Probable WRKY transcription factor 4
2lex_A2e-27138205774Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782635.16e-92PREDICTED: probable WRKY transcription factor 28 isoform X1
RefseqXP_016452899.15e-92PREDICTED: probable WRKY transcription factor 28
TrEMBLA0A1S3YKZ11e-90A0A1S3YKZ1_TOBAC; probable WRKY transcription factor 28
TrEMBLA0A1U7X8591e-90A0A1U7X859_NICSY; probable WRKY transcription factor 28 isoform X1
STRINGXP_009782635.12e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-51WRKY DNA-binding protein 13