PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01514g03016.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 215aa MW: 23904.4 Da PI: 4.5231

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01514g03016.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.5	3.5e-09	16	45	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+W+ eEd++l+ ++++G g+W++ ++ Peinf101Scf01514g03016.1 16 KGPWSSEEDLRLITFIQKHGHGNWRSLPKQ 45 79***********************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-13	7	45	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.761	11	60	IPR017930	Myb domain
SuperFamily	SSF46689	2.01E-8	11	47	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-7	16	46	IPR001005	SANT/Myb domain
CDD	cd00167	3.83E-5	18	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MGKGRAPCCD KSKVKKGPWS SEEDLRLITF IQKHGHGNWR SLPKQAVSHT NWSQDVSTKA 60 NEVEFKDDML TEKEPKEAAK SCSPTTSYGS NLSNLSQVEI SSPKGLDMDN WILSPKVHDI 120 HDDGVIEIPS MESDIDFWDM LDILDPSPTT TTTTSNSESK QDNQPVCQGV SDSECQKWLR 180 YLENELGLSQ STGANCYDCT DAVTSQDKEA HPFTT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612238.1	4e-38	PREDICTED: myb-related protein 340-like
Refseq	XP_016506175.1	5e-38	PREDICTED: myb-related protein 340-like
TrEMBL	A0A1S4CYD3	1e-36	A0A1S4CYD3_TOBAC; myb-related protein 340-like
STRING	XP_009612238.1	2e-37	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56160.1	5e-23	myb domain protein 72