PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01529g01006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 394aa MW: 43563.4 Da PI: 7.5793

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01529g01006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.8e-17	54	114	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ +kl ++ +++V++WFqNr+ + k+ Peinf101Scf01529g01006.1 54 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 114 89***************99***********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.382	50	115	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-12	50	118	IPR009057	Homeodomain-like
SMART	SM00389	5.7E-9	52	119	IPR001356	Homeobox domain
CDD	cd00086	2.92E-8	53	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-6	53	120	IPR009057	Homeodomain-like
Pfam	PF00046	4.6E-15	54	114	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MASSNRHWPS MFKSKPCNSH HHHHQWQHDI NSSLIQKAPC NPAEGCEERS PEPKPRWNPR 60 PEQIRILEAI FNSGMVNPPR DEIRKIRAKL QEYGQVGDAN VFYWFQNRKS RSKHKQRQST 120 KVNQQTPHNN ITITAPSNSS SSSSDKSSQN STGHHHKSSS SLTFSIGSTN VMDLLNSPTA 180 SVNQQQQTYN FQNEFFLNEP FFFAIEPAPS PTAQSASVTQ GLCFPDYSTS FSSSHHVTNP 240 SAAGLFMSEL MGISQTPSKK TEMNLQSQLM SYTSTVTSAP STTTHSVLPL TTTTTTTTIP 300 ASSHIQGVVE PTGAAPTRST VFINDVAFEV GVGPFNVKEV FGEDAVLIHS SGEPLVTNEW 360 GLTIQPLQHG AFYYLLRTST ATHDHNTIDL VLQI

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MASSNRHWPS MFKSKPCNSH HHHHQWQHDI NSSLIQKAPC NPAEGCEERS PEPKPRWNPR  60
PEQIRILEAI FNSGMVNPPR DEIRKIRAKL QEYGQVGDAN VFYWFQNRKS RSKHKQRQST  120
KVNQQTPHNN ITITAPSNSS SSSSDKSSQN STGHHHKSSS SLTFSIGSTN VMDLLNSPTA  180
SVNQQQQTYN FQNEFFLNEP FFFAIEPAPS PTAQSASVTQ GLCFPDYSTS FSSSHHVTNP  240
SAAGLFMSEL MGISQTPSKK TEMNLQSQLM SYTSTVTSAP STTTHSVLPL TTTTTTTTIP  300
ASSHIQGVVE PTGAAPTRST VFINDVAFEV GVGPFNVKEV FGEDAVLIHS SGEPLVTNEW  360
GLTIQPLQHG AFYYLLRTST ATHDHNTIDL VLQI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF187282	0.0	EF187282.1 Petunia x hybrida SISTER OF EVERGREEN mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009793301.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
Refseq	XP_009793302.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like isoform X2
Refseq	XP_016489291.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBL	A9XDF8	0.0	A9XDF8_PETHY; SISTER OF EVERGREEN
STRING	XP_009793301.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-53	homeobox-3