PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01533g03066.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Dof
Protein Properties Length: 375aa    MW: 41032.6 Da    PI: 8.65
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01533g03066.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.3e-4095156263
                    zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                               k++a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss
  Peinf101Scf01533g03066.1  95 KDQAVNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKKSSS 156
                               7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2587143IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3396153IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.92999153IPR003851Zinc finger, Dof-type
PROSITE patternPS013610101137IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
LSLSTNIKQD TTSIHKPSQT FLFLLLKPLA HKAALFFLFT IFFLKKISSS CSSSSSMDTV  60
QWPQEIVVKP MEEIIPNTNT SSKPNCVERK ARPQKDQAVN CPRCNSTNTK FCYYNNYSLS  120
QPRYFCKTCR RYWTEGGSLR NIPVGGGSRK NKKSSSSTSS SSPYSNVVNP LKKLPDLVPP  180
PHHDQNPSKI LEGSQDLNLG FSSDFKTISE LIQVPNFDGN NNKDNNNASI SPMAPPSSAS  240
SSASSSQLSA MELINGITSR GLNNNNNSFM SLMPISHDPS SVYSSGFSLM PSLNFSLDHH  300
GLGTDHNPYG NHLQETNTSG RFLFPFVGLK QVSSTTTTTN DGANEHDNRD HHEPVGDQST  360
GSYWNGMLGG GGGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755208e-75HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485727.11e-142PREDICTED: dof zinc finger protein DOF4.6-like, partial
SwissprotQ8LAP84e-64DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A1S4BA471e-140A0A1S4BA47_TOBAC; dof zinc finger protein DOF4.6-like
STRINGXP_009766033.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.12e-45Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]