PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01533g04035.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 221aa MW: 25350.6 Da PI: 6.9956

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01533g04035.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.8e-17	14	71	1	48
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed ll ++++q+G g +W++Ia +++ gRt++++k++w+++l Peinf101Scf01533g04035.1 14 KGPWSAKEDSLLTNYINQHGEGqwrslpknagnRWSLIAGRLP-GRTDNEIKNYWNTHL 71 79***************************************.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.66E-14	8	79	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.8E-21	8	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.318	9	75	IPR017930	Myb domain
SMART	SM00717	1.9E-15	13	73	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	14	71	IPR001005	SANT/Myb domain
CDD	cd00167	8.66E-12	16	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MGRAPCCVKE GLRKGPWSAK EDSLLTNYIN QHGEGQWRSL PKNAGNRWSL IAGRLPGRTD 60 NEIKNYWNTH LLKKLKSVGI VPKPHKIFSK KASKKGQSIQ VEKSKVYVPK PIRISCGISR 120 NNSFENVTFS TTCSSNSYEE VDVEIENNKD GIMNNENEVN FDFCDEFLME DWCHFSNKGS 180 LPMNESMVEK VYEEYLLLLS ENCYLQEDQR EHTFTGNVSE L

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792412.1	1e-88	PREDICTED: transcription factor MYB3-like
Swissprot	Q9S9K9	2e-31	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A0V0HKF8	2e-87	A0A0V0HKF8_SOLCH; Putative transcription factor MYB3-like
TrEMBL	A0A1U7XK33	3e-87	A0A1U7XK33_NICSY; transcription factor MYB3-like
STRING	XP_009792412.1	5e-88	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-33	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]