PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01543g00042.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 235aa    MW: 27935.8 Da    PI: 8.7873
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01543g00042.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.74.7e-212721386
                  trihelix 13 arremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                              +r e+++++ ++k++k lWe ++ km+++g++rsp+qCk+kw+nl +ryk +++ e +     ++++p++++l+
  Peinf101Scf01543g00042.1  2 IRAELDQTFMETKRNKLLWEVIATKMKDKGYQRSPEQCKCKWKNLVTRYKGCETLEPEA--L-RQQFPFYNELQ 72
                              7999*****************************************************95..3.4589*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.27E-17154No hitNo description
PROSITE profilePS500906.086547IPR017877Myb-like domain
PfamPF138376.9E-16574No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MIRAELDQTF METKRNKLLW EVIATKMKDK GYQRSPEQCK CKWKNLVTRY KGCETLEPEA  60
LRQQFPFYNE LQAIFAARMQ RMLWMEAEGA SGSKKKTISQ LSSDEEDENE DSEGEKVGIS  120
KKKRKVVKGN VGGGSSSNSG NVVNSFKEIL DDFMKQQMAM EMQWLKAYEA REEERRMKEM  180
EWRQTMEALE NERLMMERRW RESEEQRRIR EEARAEKRDA LITALLNKLR REDHN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754486e-87HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250357.11e-122PREDICTED: trihelix transcription factor GT-3b-like
SwissprotQ9SDW04e-67TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A1J6I7M61e-120A0A1J6I7M6_NICAT; Trihelix transcription factor gt-3b
STRINGXP_009799172.11e-121(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.17e-49Trihelix family protein