PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01556g01036.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29129.9 Da    PI: 9.8273
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01556g01036.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.5e-30959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+eys+
  Peinf101Scf01556g01036.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYST 59
                              79***********************************************96 PP
2K-box89.37.2e-3081182799
                     K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke.... 86 
                               +  +++ +  s++ e+akLk+++e Lqr+q+h+ GedL+sLs+keLq+LeqqL+++lk+iRs+Kn+l++e+i+elqkk ++    
  Peinf101Scf01556g01036.1  81 SGaTDTDTPGSWTLEHAKLKARLEVLQRNQKHYAGEDLDSLSMKELQNLEQQLDSALKHIRSRKNQLMHESISELQKKVRNlsfk 165
                               44345556789*****************************************************************998762222 PP

                     K-box  87 ....lqeenkaLrkkle 99 
                                   lqe+n++L+k+++
  Peinf101Scf01556g01036.1 166 rdkaLQEQNNKLSKQVK 182
                               22225788888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-33280IPR002100Transcription factor, MADS-box
CDDcd002653.44E-41279No hitNo description
PRINTSPR004046.0E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2489181IPR002487Transcription factor, K-box
PROSITE profilePS5129716.36689187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYSTD  60
SCMERILERY ERYSYAERQL SGATDTDTPG SWTLEHAKLK ARLEVLQRNQ KHYAGEDLDS  120
LSMKELQNLE QQLDSALKHI RSRKNQLMHE SISELQKKVR NLSFKRDKAL QEQNNKLSKQ  180
VKEREKELAQ QSQWEPQSHD LNSSSFVLSQ PLNSLHLGEA YPSAGDNGEV EGSSRQQPPN  240
TVMPPWMLRH LNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q8e-22174173Myocyte-specific enhancer factor 2B
1tqe_R8e-22174173Myocyte-specific enhancer factor 2B
1tqe_S8e-22174173Myocyte-specific enhancer factor 2B
6byy_A9e-22174173MEF2 CHIMERA
6byy_B9e-22174173MEF2 CHIMERA
6byy_C9e-22174173MEF2 CHIMERA
6byy_D9e-22174173MEF2 CHIMERA
6bz1_A1e-21174173MEF2 CHIMERA
6bz1_B1e-21174173MEF2 CHIMERA
6bz1_C1e-21174173MEF2 CHIMERA
6bz1_D1e-21174173MEF2 CHIMERA
6c9l_A8e-22174173Myocyte-specific enhancer factor 2B
6c9l_B8e-22174173Myocyte-specific enhancer factor 2B
6c9l_C8e-22174173Myocyte-specific enhancer factor 2B
6c9l_D8e-22174173Myocyte-specific enhancer factor 2B
6c9l_E8e-22174173Myocyte-specific enhancer factor 2B
6c9l_F8e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1767830.0AF176783.1 Petunia x hybrida floral binding protein 26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238190.11e-164PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-141AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLQ9SBQ01e-175Q9SBQ0_PETHY; Floral binding protein 26
STRINGXP_009792071.11e-164(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-104AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]