PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01556g01045.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22459.4 Da    PI: 9.3617
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01556g01045.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.47.1e-32959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Peinf101Scf01556g01045.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                              79***********************************************96 PP
2K-box89.37.1e-3081162889
                     K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                               +++++++++ ++e+ +Lk+++e Lqr+qR+llGedL++Ls k+L+qLe+qLe+slk+iRs+K++++l+q+ +lq++   l++
  Peinf101Scf01556g01045.1  81 NQSATDNQNNYHEYLRLKARVELLQRSQRNLLGEDLGTLSTKDLEQLENQLETSLKQIRSRKTQFMLDQLADLQQRPLGLNS 162
                               3688899*******************************************************************99766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
CDDcd002651.65E-44278No hitNo description
SuperFamilySSF554552.35E-34283IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2583165IPR002487Transcription factor, K-box
PROSITE profilePS5129713.83787174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SSMTKTIEKY QRCSYATLEA NQSATDNQNN YHEYLRLKAR VELLQRSQRN LLGEDLGTLS  120
TKDLEQLENQ LETSLKQIRS RKTQFMLDQL ADLQQRPLGL NSSNSSQFGY NPAATDEENA  180
AATTHNMNGF IHGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-23921662296Developmental protein SEPALLATA 3
4ox0_B2e-23921662296Developmental protein SEPALLATA 3
4ox0_C2e-23921662296Developmental protein SEPALLATA 3
4ox0_D2e-23921662296Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352410.0AF335241.1 Petunia x hybrida MADS-box transcription factor FBP23 (FBP23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311550.11e-123MADS-box protein CMB1-like
RefseqXP_010318407.11e-123MADS-box protein 1 isoform X1
SwissprotQ7Y0401e-122EJ2_SOLLC; MADS-box protein EJ2
TrEMBLQ9ATE61e-129Q9ATE6_PETHY; MADS-box transcription factor FBP23
STRINGSolyc03g114840.2.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.13e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]