PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01556g03010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 334aa    MW: 37407.2 Da    PI: 6.4255
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01556g03010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.61.6e-2853157297
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................... 65 
                                g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WL+ + k  i++l+ +                     
  Peinf101Scf01556g03010.1  53 FGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVVDWLIDATKNDIDKLPPLqippgyfnrfhqppffsqesa 137
                               689*************************************************************444444444333322211111 PP

                       TCP  66 ..ssssaseceaesssssasnsssg....kaaksaaks 97 
                                 +              ++  +  +    + a+ ++ks
  Peinf101Scf01556g03010.1 138 lrE--------------KS--K--AidieSGASGKNKS 157
                               110..............11..1..12232112222111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-2655154IPR005333Transcription factor, TCP
PROSITE profilePS5136928.37255113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNNSRGNNFE AKQETGGTNN NNIKFSKSTT TPSSSRQWGG FKNPRIVRVS RAFGGKDRHS  60
KVCTIRGLRD RRIRLSVPTA IQLYDLQERL GLSQPSKVVD WLIDATKNDI DKLPPLQIPP  120
GYFNRFHQPP FFSQESALRE KSKAIDIESG ASGKNKSIAS NDDQGNNQED IGGYNIPQIA  180
AQSFFPLGNS YYQFEPSNLS LAQFGHPQME DSQNTLPLSL ASSLPFPSGS HQVYFNPTAA  240
TPFPPIIPPY MTNYPLDQSD SRAQLNHFHF LNSSTQHVLP NSIMPTLNLI SNSPMRPFSL  300
NDDPRWTHSR EDDDDDDDED DSQPHEGRSV NNNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1760114155Putative transcription factor PCF6
5zkt_B1e-1760114155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620849.11e-133PREDICTED: transcription factor TCP5
RefseqXP_009620850.11e-133PREDICTED: transcription factor TCP5
TrEMBLA0A1S3YDZ21e-132A0A1S3YDZ2_TOBAC; transcription factor TCP5-like
TrEMBLA0A1U7WT271e-132A0A1U7WT27_NICSY; transcription factor TCP5-like
STRINGXP_009620849.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.17e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5