PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01556g10035.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Dof

Protein Properties

Length: 490aa MW: 53244.4 Da PI: 6.1254

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01556g10035.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	145	205	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ Peinf101Scf01556g10035.1 145 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNNA 205 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	142	202	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-32	147	203	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	149	203	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	151	187	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MREVKDPEIK LFGKKIALPE NGIIIPVIVS GEDSGVGKLS SSTGSDDDPC LLDKDESSDD 60 GSEFDREEAD KDQITRELTG AKSEEKDQNR MMEEFENLKS PSTQSENRPK TPSTDDDDSA 120 AVKSSKTEDD QNDAANSQQK TLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKSCQ 180 RYWTAGGTMR NVPVGAGRRK NKNNASHCRH IMISEALQAA RIDPPNGFHH QTFKPNGTVL 240 SFGPDSPLCD SMASVLNIAE KKTPNGIPNG FYKLEHKNPS CIGGVNGDDC SSVSSVTTNS 300 KVEGVINQPP EVVMQTINGF QTPVPCLPGV PWPFPFAAVP FPAISPTGYP MQFCPPPYWN 360 CNVPGPWSIP WLTPPSPTAN QKVSGSAPTS PLGKHSRDGD LIKPNSPEGQ TNSEGSVLVP 420 KTLRIDDPDD AAKSSIWSTL GINYDSVSRG GLFKALQPKS SDKNHTATAS PAMQANPAAF 480 SRSLSFQERV

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MREVKDPEIK LFGKKIALPE NGIIIPVIVS GEDSGVGKLS SSTGSDDDPC LLDKDESSDD  60
GSEFDREEAD KDQITRELTG AKSEEKDQNR MMEEFENLKS PSTQSENRPK TPSTDDDDSA  120
AVKSSKTEDD QNDAANSQQK TLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKSCQ  180
RYWTAGGTMR NVPVGAGRRK NKNNASHCRH IMISEALQAA RIDPPNGFHH QTFKPNGTVL  240
SFGPDSPLCD SMASVLNIAE KKTPNGIPNG FYKLEHKNPS CIGGVNGDDC SSVSSVTTNS  300
KVEGVINQPP EVVMQTINGF QTPVPCLPGV PWPFPFAAVP FPAISPTGYP MQFCPPPYWN  360
CNVPGPWSIP WLTPPSPTAN QKVSGSAPTS PLGKHSRDGD LIKPNSPEGQ TNSEGSVLVP  420
KTLRIDDPDD AAKSSIWSTL GINYDSVSRG GLFKALQPKS SDKNHTATAS PAMQANPAAF  480
SRSLSFQERV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364590.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	M1BQ21	0.0	M1BQ21_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400050273	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	9e-84	cycling DOF factor 2