PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01556g11058.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Nin-like
Protein Properties Length: 231aa    MW: 26141.2 Da    PI: 4.9056
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01556g11058.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.61.9e-26144192452
                    RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                +s e++skyF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl
  Peinf101Scf01556g11058.1 144 MLSRETISKYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 192
                               6899******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.961124215IPR003035RWP-RK domain
PfamPF020428.0E-22145192IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MASQSNFEKM SKEDDHQDVF SLATQLPSLD FSGYYSGYCA ADYQYDLSIQ EGAFDTNPLE  60
MFFDDSLYSS FYRELDYGDL GSGLIAWNET AEFGLLSTEH GTGNHQLLLC DKNQEIMITN  120
GVENKEGSPK QEADDSNIYC SSRMLSRETI SKYFYMPITQ AAKELNIGLT LLKKRCRELG  180
IRRWPHRKLM SLETLIKNVK GRKWSGAKVE RSGKAIGEGE EDAGRNSRQA T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754426e-53HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459710.17e-77PREDICTED: protein RKD1-like
TrEMBLA0A1S3Z5F82e-75A0A1S3Z5F8_TOBAC; protein RKD1-like
STRINGXP_009778708.15e-75(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42742142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.15e-31RWP-RK domain-containing protein