PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01556g11063.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 235aa MW: 25307.2 Da PI: 4.2036

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01556g11063.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.4	1e-10	14	42	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT+eEd +lv +++q+G+g+W++++ Peinf101Scf01556g11063.1 14 KGPWTPEEDIILVSYIQQHGPGNWRAVPT 42 79***********************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-12	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.38E-9	8	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.003	9	61	IPR017930	Myb domain
Pfam	PF00249	1.3E-8	14	41	IPR001005	SANT/Myb domain
CDD	cd00167	3.54E-6	16	40	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRAV PTNTDIHMAK KALCEALSLD 60 KPTSNNPTQI PVQESVQPCT TYASSAENIS RLLQNWMKNS PKSSQLSQSN SESTTTQSSS 120 YNNISMGQVG SSSSPSEGTI SVATPEGFDS LFSFNSSSVD EGNAAIFQVD SKPNLPNLNA 180 ENGFFLEESK PTLESQVPLT LLEKWLFDDA INAPAQEELM GIGMGMALGE AADLF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	2e-55	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009594207.1	5e-88	PREDICTED: myb-related protein 306
Refseq	XP_016450803.1	5e-88	PREDICTED: myb-related protein 306-like
Swissprot	P81392	9e-29	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A1S3YFK0	1e-86	A0A1S3YFK0_TOBAC; myb-related protein 306-like
STRING	XP_009594207.1	2e-87	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	2e-27	myb domain protein 60

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]