PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01574g02001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 293aa    MW: 31735.4 Da    PI: 8.6586
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01574g02001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.73.9e-3857153197
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               aCaaCk++rr+Ca+dC+lapyfpae++k+f n+hklFG+sn+lk+lk++++ ++++am++l+ eA++ra+dPv G+++vil+l++
  Peinf101Scf01574g02001.1  57 ACAACKYQRRRCAPDCPLAPYFPAERQKDFLNAHKLFGVSNILKVLKNVSPCQKDNAMKALILEANIRADDPVGGCYRVILNLHR 141
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelall 97 
                               q++  +++l+++
  Peinf101Scf01574g02001.1 142 QINYCQSQLQHV 153
                               ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.75556157IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3757153IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKNVNNTQNI SSSSTPPVIS SSPTASAAPA PIRSNHRNRV ASGGGSSSGS SGNGSQACAA  60
CKYQRRRCAP DCPLAPYFPA ERQKDFLNAH KLFGVSNILK VLKNVSPCQK DNAMKALILE  120
ANIRADDPVG GCYRVILNLH RQINYCQSQL QHVYRDLFRV QAATLQEQQN NINATAVSIR  180
GNSYSTMSFD MLPLHSLHGF NVSNSISIGE EGSSSTQIVK GNGVEGFSSD EDFEDKTMVT  240
SSNGKQPIVE FEDIKSSFES IDDFKGKGDD FKGKGVATYL SDDKVVSKAR RVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-26461651119LOB family transfactor Ramosa2.1
5ly0_B1e-26461651119LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443041.11e-114PREDICTED: LOB domain-containing protein 7-like, partial
TrEMBLA0A1S3XSW61e-113A0A1S3XSW6_TOBAC; LOB domain-containing protein 7-like
STRINGXP_009607074.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA142941012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-40LOB domain-containing protein 22