PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01617g01032.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 191aa    MW: 20706.5 Da    PI: 7.3943
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01617g01032.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.32.5e-282103197
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C++lr++C ++C++++ +     p +q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg++
  Peinf101Scf01617g01032.1   2 SCNGCRILRKGCHENCMIRQSLqgiesPLAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFEACGRTINPVNGAVGLL 86 
                               6*********************9999999******************************************************** PP

                    DUF260  81 lklqqqleqlkaelall 97 
                                +++++++q+++e++l+
  Peinf101Scf01617g01032.1  87 GTGNWHICQSAVETVLQ 103
                               ***********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4941107IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSCNGCRILR KGCHENCMIR QSLQGIESPL AQANATVFVA KFFGRAGLMS FLSSVPESQR  60
PALFQSLLFE ACGRTINPVN GAVGLLGTGN WHICQSAVET VLQGGMLRAL PEYSSVAAAA  120
SVAEQEDLDQ GLMSRLPARI MMGAEKRRAS TPASLNSDES DTTTFESGNV CHQQNQHTQQ  180
GHETKLLRLF Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233192.18e-93PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SN231e-60LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1J6KXX92e-91A0A1J6KXX9_NICAT; Lob domain-containing protein 37
STRINGXP_009625187.16e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.19e-63LOB domain-containing protein 38