PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01674g02007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 117aa MW: 12774.4 Da PI: 4.4326

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01674g02007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39	1e-12	3	50	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie++ r f k + +l A+ELSv+++aev vi++s++gk y+y Peinf101Scf01674g02007.1 3 KIESEAVRLAAFLKLKSQLLMEAHELSVMTGAEVGVIVYSPSGKPYTY 50 69999******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.661	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-4	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-15	1	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.5E-15	3	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-5	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-5	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MRKIESEAVR LAAFLKLKSQ LLMEAHELSV MTGAEVGVIV YSPSGKPYTY GYLSSFETIL 60 DRFLKWSENR PHDGVDDLQE PVSAASFIDV PASPRTSCVA IDLNVADPDD GESSASH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14083	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	2e-13	AGAMOUS-like 44