PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01676g01017.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 340aa MW: 39130 Da PI: 8.5149

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01676g01017.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.1	8.5e-54	21	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL+ kv + ++ +i+evd++++ePw+Lp ++k +e+ewyfFs rd+ky+tg r+nrat +gyWka Peinf101Scf01676g01017.1 21 LPPGFRFHPTDEELITFYLASKVFNGTFCG-IHIAEVDLNRCEPWELPDAAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKA 104 79***********************887.78***********8888999************************** PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd+ev+s+ ++ l+g+kktLvfykgrap+gekt+Wvmheyrl Peinf101Scf01676g01017.1 105 TGKDREVYSAtnGSLLIGMKKTLVFYKGRAPRGEKTKWVMHEYRL 149 *****8656667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-64	16	172	IPR003441	NAC domain
PROSITE profile	PS51005	59.081	21	172	IPR003441	NAC domain
Pfam	PF02365	4.1E-28	22	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MLAMEEILCE LNREDMNEQG LPPGFRFHPT DEELITFYLA SKVFNGTFCG IHIAEVDLNR 60 CEPWELPDAA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSATNGSLL 120 IGMKKTLVFY KGRAPRGEKT KWVMHEYRLG GDFSYRNYSS KEEWVICRIL HKIGEKKNPI 180 YQADGQNCGY INTLKTWSST SSSLLNNSRA PLVETTTPNP KTITSTTLLQ ESFQNSVQSL 240 HNYYLFHHQE NDLMKSLFNN IAQTNYHFPV NSSHHVLSPS SFSTSQSTKR YKDNKQEICT 300 SLKENGTKQI MQYPKIEQGN FSQCQPYSGN NCYNQNPMAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-52	14	172	10	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-52	14	172	10	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-52	14	172	10	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-52	14	172	10	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-52	14	172	13	168	NAC domain-containing protein 19
3swm_B	3e-52	14	172	13	168	NAC domain-containing protein 19
3swm_C	3e-52	14	172	13	168	NAC domain-containing protein 19
3swm_D	3e-52	14	172	13	168	NAC domain-containing protein 19
3swp_A	3e-52	14	172	13	168	NAC domain-containing protein 19
3swp_B	3e-52	14	172	13	168	NAC domain-containing protein 19
3swp_C	3e-52	14	172	13	168	NAC domain-containing protein 19
3swp_D	3e-52	14	172	13	168	NAC domain-containing protein 19
4dul_A	3e-52	14	172	10	165	NAC domain-containing protein 19
4dul_B	3e-52	14	172	10	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB255374	0.0	AB255374.1 Petunia x hybrida PhCUC3 mRNA for CUP-SHAPED COTYLEDON3, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616121.1	1e-166	PREDICTED: protein CUP-SHAPED COTYLEDON 3
Refseq	XP_009796445.1	1e-165	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1
Refseq	XP_009796446.1	1e-165	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X2
Refseq	XP_016516166.1	1e-166	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	4e-97	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0ZSF8	0.0	A0ZSF8_PETHY; CUP-SHAPED COTYLEDON3
STRING	XP_009796446.1	1e-164	(Nicotiana sylvestris)
STRING	XP_009616121.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-98	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]