PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01732g03001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Dof

Protein Properties

Length: 371aa MW: 40805 Da PI: 7.526

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01732g03001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.3e-39	51	111	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + Peinf101Scf01732g03001.1 51 QQQPLNCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 111 68999*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-33	53	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.376	55	109	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-28	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MLRDCEKMVL IPSTSTNEWS QIDEKNLMMA SNGGSDIEKP IQNSQQQQQQ QQQPLNCPRC 60 DSANTKFCYY NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRI KRPSVNSSTN 120 DHIAPNSISV ATTTNPSYQN DIHGATRNID LSSTITSNHL TPLFYGLTNG SSDHLNVPFS 180 RLFNSRILST TDEGQVYSLA ADNIPGLMDR RAGLVSSSGV LMGENYGHGF NSTKQIQDVV 240 TTSSSSLLSS YPMFGSSSST SNSTSTMASL IASSFQQQKF ISNSNNFHSL APYEELQMSG 300 NNNVEGGSEI MLKEEKTEGG NGQNRLNWNN LSNHQSQIHE QIISSNDPSI PWNGAWFDPS 360 NMGSNSVPSL I

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MLRDCEKMVL IPSTSTNEWS QIDEKNLMMA SNGGSDIEKP IQNSQQQQQQ QQQPLNCPRC  60
DSANTKFCYY NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRI KRPSVNSSTN  120
DHIAPNSISV ATTTNPSYQN DIHGATRNID LSSTITSNHL TPLFYGLTNG SSDHLNVPFS  180
RLFNSRILST TDEGQVYSLA ADNIPGLMDR RAGLVSSSGV LMGENYGHGF NSTKQIQDVV  240
TTSSSSLLSS YPMFGSSSST SNSTSTMASL IASSFQQQKF ISNSNNFHSL APYEELQMSG  300
NNNVEGGSEI MLKEEKTEGG NGQNRLNWNN LSNHQSQIHE QIISSNDPSI PWNGAWFDPS  360
NMGSNSVPSL I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX022891	2e-54	JX022891.1 UNVERIFIED: Solanum lycopersicoides voucher UCD:TGRC LA2408 putative Dof zinc finger protein-like (Dof01) gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016441727.1	1e-165	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1S3XPZ3	1e-164	A0A1S3XPZ3_TOBAC; dof zinc finger protein DOF1.4-like
STRING	XP_009623141.1	1e-165	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	8e-37	Dof family protein