PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01734g05023.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 195aa    MW: 21336.3 Da    PI: 6.476
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01734g05023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601361.4e-42381371100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdP+yG++g i +lq+
  Peinf101Scf01734g05023.1  38 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPIYGCAGSICQLQK 122
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ l+a+la++++e
  Peinf101Scf01734g05023.1 123 QVNDLQAQLAKAQAE 137
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.18137138IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-4238135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MESSTITSSS SRSISPSISS SSPNSPPLSP PAMVVVSPCA ACKILRRRCA EKCVLAPYFP  60
PNDPIKFTTA HRVFGASNII KFLQELPESQ RADAVSSMVY EANARLRDPI YGCAGSICQL  120
QKQVNDLQAQ LAKAQAEIVN MQCQQANLMA LICMEIDQSP KSSPPQQPLD NFTNNIPHFF  180
DDNNNFGSLL ETLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-433714510118LOB family transfactor Ramosa2.1
5ly0_B7e-433714510118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548470.11e-101PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR02e-71LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1U8EYI91e-99A0A1U8EYI9_CAPAN; LOB domain-containing protein 1-like
TrEMBLA0A2G2VP721e-99A0A2G2VP72_CAPBA; LOB domain-containing protein 1
TrEMBLA0A2G3BA611e-99A0A2G3BA61_CAPCH; LOB domain-containing protein 1
STRINGXP_009593636.12e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-70LOB domain-containing protein 1