PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01737g02018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 276aa MW: 31013.7 Da PI: 5.8705

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01737g02018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.1	1.1e-21	96	156	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe+ n +ps++++++++++l +++e++V++WFqNrRa+ k+ Peinf101Scf01737g02018.1 96 RQRWTPTPMQLQILERIFEQgNGTPSKQKIKDITSELsqhgQISETNVYNWFQNRRARSKR 156 89***************99************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.078	92	157	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.4E-18	92	161	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-14	94	161	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-19	95	160	IPR009057	Homeodomain-like
CDD	cd00086	1.50E-14	96	158	No hit	No description
Pfam	PF00046	1.8E-19	96	156	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEWEKQQQQQ QQPPQMVEEL AGGGGGGSGS GMFVKVMTDE QMEVLRKQIA VYATICEQLV 60 DLHKSMASQH DLAGARLGNL YCDPLVMSAG HKITGRQRWT PTPMQLQILE RIFEQGNGTP 120 SKQKIKDITS ELSQHGQISE TNVYNWFQNR RARSKRKQQV TTTNNAESEV ETEVESPNEK 180 KTKPEDLQSP HMTTTRAEDL GYQNPEVSSG MHSLDPRTSK PEPLFPSESI SKPAGSYGEM 240 SFYGMSNPRM DQLMGKMEVP ASYHPYLHAE DYNMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	157	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215450	0.0	AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777417.1	1e-172	PREDICTED: WUSCHEL-related homeobox 8-like
Refseq	XP_016442227.1	1e-172	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	O81788	1e-87	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A1S3XRB3	1e-171	A0A1S3XRB3_TOBAC; WOX13b
TrEMBL	A0A1U7WBQ3	1e-171	A0A1U7WBQ3_NICSY; WUSCHEL-related homeobox 8-like
STRING	XP_009777417.1	1e-171	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-89	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]