PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01786g04007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Trihelix

Protein Properties

Length: 342aa MW: 38369.6 Da PI: 9.7427

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01786g04007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.6	8.2e-19	36	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf..erspkqCkekwenlnkrykkikegekk....rtsessst 78 +W+++e+ aLi+a+r+++ +lrrg+l++++W+ev++ + + ++ ++++qC++k+e+l+kry+ + +++ r+ + s+ Peinf101Scf01786g04007.1 36 CWSHDETAALIDAYRKKWYSLRRGNLRANHWQEVADDVfTRCPIdpPKTAVQCRHKMEKLRKRYRTEIQRAAPyggvRSHRYCSS 120 8***********************************7444444489***************99988764111135566678 PP trihelix 79 cpyfdqle 86 +++f++++ Peinf101Scf01786g04007.1 121 WVHFKRMD 128 88898887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-20	35	130	No hit	No description
PROSITE profile	PS50090	6.4	37	96	IPR017877	Myb-like domain
SMART	SM00595	8.1E-9	44	135	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEAQTFSTTP PPPPQLPSPN NVTVAVSSSR RLPPPCWSHD ETAALIDAYR KKWYSLRRGN 60 LRANHWQEVA DDVFTRCPID PPKTAVQCRH KMEKLRKRYR TEIQRAAPYG GVRSHRYCSS 120 WVHFKRMDDM EKGPNNDNVG SSDDEGHEDN VDDYRQNSVK LSNLYGNNNV VSSTMNRSSS 180 YQGVVSNGGG GFRIRIPGMP GIAAQTAAPL PMAKPYTNSR VEDIGVENPN NYYGSSNKMF 240 RADIMGKRVV GEGGGVGGVG EKKKGDSMGE IVAAIKVLGD GFVRMERMKM DMARELEERR 300 MEMEIKKTEM ILESQQRIVE AFAQALSEKK HKKAKRMPIP EC

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEAQTFSTTP PPPPQLPSPN NVTVAVSSSR RLPPPCWSHD ETAALIDAYR KKWYSLRRGN  60
LRANHWQEVA DDVFTRCPID PPKTAVQCRH KMEKLRKRYR TEIQRAAPYG GVRSHRYCSS  120
WVHFKRMDDM EKGPNNDNVG SSDDEGHEDN VDDYRQNSVK LSNLYGNNNV VSSTMNRSSS  180
YQGVVSNGGG GFRIRIPGMP GIAAQTAAPL PMAKPYTNSR VEDIGVENPN NYYGSSNKMF  240
RADIMGKRVV GEGGGVGGVG EKKKGDSMGE IVAAIKVLGD GFVRMERMKM DMARELEERR  300
MEMEIKKTEM ILESQQRIVE AFAQALSEKK HKKAKRMPIP EC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016544457.1	1e-155	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A2G3DIW1	1e-154	A0A2G3DIW1_CAPCH; Uncharacterized protein
STRING	PGSC0003DMT400004269	1e-154	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-46	Trihelix family protein