PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01822g01036.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ZF-HD

Protein Properties

Length: 206aa MW: 23401.9 Da PI: 6.6388

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01822g01036.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.4	3.6e-33	53	107	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k +YkeClkNhA+ +GghavDGCgEfmp+ ge+g+ ++lkCaAC+CHRnFHR+ ++ Peinf101Scf01822g01036.1 53 KPKYKECLKNHAVGIGGHAVDGCGEFMPA-GEDGSLDSLKCAACNCHRNFHRKVPT 107 679***********************9.999******************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01566	4.7E-31	55	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	9.4E-30	55	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-21	55	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.822	56	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	5.0E-16	167	205	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.96E-7	168	205	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDQFEDQEDQ KQVEEIQPSH DSLNNTNSTQ PKMPSPPHPQ QQQLVQYNTW NNKPKYKECL 60 KNHAVGIGGH AVDGCGEFMP AGEDGSLDSL KCAACNCHRN FHRKVPTTPP AEHFVYHPSY 120 YRTLPPPCGY LHHVAPQQRP LALPSTSGGG GYREDLEDMS NPNSSGDKLG WRIQRDDEEL 180 VQQFCNETGV RRQVFKVWMH NNKHTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	3e-14	166	205	36	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769508.1	2e-97	PREDICTED: zinc-finger homeodomain protein 2-like isoform X1
Refseq	XP_009769511.1	2e-97	PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
Refseq	XP_016472938.1	2e-97	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	3e-50	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1S4A8H1	4e-96	A0A1S4A8H1_TOBAC; zinc-finger homeodomain protein 2-like
TrEMBL	A0A1U7VT27	6e-96	A0A1U7VT27_NICSY; zinc-finger homeodomain protein 2-like isoform X1
TrEMBL	A0A1U7VX16	4e-96	A0A1U7VX16_NICSY; zinc-finger homeodomain protein 2-like isoform X2
STRING	XP_009769508.1	9e-97	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-52	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]