PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01836g09022.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 392aa    MW: 44618.2 Da    PI: 6.9831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01836g09022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-52151421128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               + pGfrFhPtdeelv +yLk+kv++k+l++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wka
  Peinf101Scf01836g09022.1  15 MLPGFRFHPTDEELVGFYLKRKVQQKPLSI-ELIKQLDIYKYDPWDLPKLATVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 98 
                               579***************************.89***************8778899****************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  Peinf101Scf01836g09022.1  99 TGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142
                               *********956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-5814173IPR003441NAC domain
PROSITE profilePS5100557.5515173IPR003441NAC domain
PfamPF023651.1E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEERNDQKEK IDEVMLPGFR FHPTDEELVG FYLKRKVQQK PLSIELIKQL DIYKYDPWDL  60
PKLATVGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSTTDSNA PKRFLDKHIS PNDSWAICRI FKKANSNAHR  180
ALSHSWVSPP VPENTTSDFL TNSHFTSSDE MSLINKTSTS PIQFSASSIN DLQNSSMASF  240
STLDLPLYKT LNSMTSYRPQ QVSILNHDPI TTCYTSSSCN ENSELRKCIN MSNIDASSLL  300
LNMSSSIFGD YSITLPENIE GGVHEETTLN EANYVNMDHM EEQWGNVRSI GLPLNNFPLN  360
MAADAWKTNL LWDSSPCPSE MSTSYSTNKC YT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-551717619168NO APICAL MERISTEM PROTEIN
1ut4_B1e-551717619168NO APICAL MERISTEM PROTEIN
1ut7_A1e-551717619168NO APICAL MERISTEM PROTEIN
1ut7_B1e-551717619168NO APICAL MERISTEM PROTEIN
3swm_A1e-551717622171NAC domain-containing protein 19
3swm_B1e-551717622171NAC domain-containing protein 19
3swm_C1e-551717622171NAC domain-containing protein 19
3swm_D1e-551717622171NAC domain-containing protein 19
3swp_A1e-551717622171NAC domain-containing protein 19
3swp_B1e-551717622171NAC domain-containing protein 19
3swp_C1e-551717622171NAC domain-containing protein 19
3swp_D1e-551717622171NAC domain-containing protein 19
4dul_A1e-551717619168NAC domain-containing protein 19
4dul_B1e-551717619168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492881e-104AC149288.1 Solanum demissum chromosome 5 clone PGEC446J10, complete sequence.
GenBankEF5142121e-104EF514212.1 Solanum tuberosum strain P6/210 contig R1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629525.10.0PREDICTED: putative NAC domain-containing protein 94 isoform X2
RefseqXP_016455718.10.0PREDICTED: protein FEZ-like isoform X2
SwissprotQ9ZVH01e-110FEZ_ARATH; Protein FEZ
TrEMBLA0A1S3YUB90.0A0A1S3YUB9_TOBAC; protein FEZ-like isoform X2
STRINGXP_009629524.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-112NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]