PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01889g13052.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 212aa MW: 24059.4 Da PI: 8.8063

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01889g13052.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.9e-09	122	162	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++++P K++ a++L +A +Y+k L Peinf101Scf01889g13052.1 122 ARQRRERISEKIKILQKMVPGG-----SKMDTASMLDEAANYLKFL 162 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.008	113	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-14	118	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	119	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.97E-11	119	167	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-12	121	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-6	122	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MDTLDWDTMP IIRNSSSSFD PIDMISSWNI CQRQEAATRL VADSVAAKSR KCPSSESSNI 60 NFQQASSSTS SLDEPDSEAI AQMKEMIYRD AAFKPVACST DEVQKPKRKN VRISTDPQTV 120 AARQRRERIS EKIKILQKMV PGGSKMDTAS MLDEAANYLK FLRTQVKELE AFGYKINPLI 180 TNFSPLYSIP FNNYPFFMQH NFPLNSIHRL MS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	127	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443824.1	4e-66	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	3e-55	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1S3XVC1	1e-64	A0A1S3XVC1_TOBAC; transcription factor bHLH87-like
STRING	Solyc06g062460.2.1	5e-65	(Solanum lycopersicum)
STRING	XP_009625228.1	5e-65	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]