PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01889g15041.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 238aa MW: 26412.1 Da PI: 7.512

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01889g15041.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.9	3.5e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 + +WT eE+e l+ +v+++G g Wk I + + R+ ++k++w++ Peinf101Scf01889g15041.1 5 KTKWTSEEEEALKAGVAKHGIGKWKNILKDPEfapflTIRSNIDLKDKWRN 55 579*******************************999********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.516	1	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-15	2	58	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-6	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	5.15E-21	7	56	No hit	No description
Gene3D	G3DSA:1.10.10.10	8.5E-11	111	172	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	4.0E-12	111	176	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	17.7	113	200	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	4.68E-11	114	172	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.4E-8	115	172	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGNQKTKWTS EEEEALKAGV AKHGIGKWKN ILKDPEFAPF LTIRSNIDLK DKWRNMGIST 60 GIAQGSDDKS RFARVRPVTA TAPAIAQSSL AMTSVAEDEV TDYPSKSRKD GKNAPKYSEM 120 IFEALSSMRD SNASDLGAIV GFIETRHEVP QNFRRLLSST LRRLVLQGKL ERSIETIEEA 180 ARTAAYKVVD AENKSFVAAE AVKEAERVSK MAEDAELMLQ LVKDIYEQCL RGETVLLA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00231	DAP	Transfer from AT1G72740	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616026.1	1e-113	PREDICTED: telomere repeat-binding factor 4
Refseq	XP_016510058.1	1e-113	PREDICTED: telomere repeat-binding factor 4-like
Swissprot	F4IEY4	5e-66	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A1S4D9K5	1e-112	A0A1S4D9K5_TOBAC; telomere repeat-binding factor 4-like
STRING	XP_009616026.1	1e-113	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2504	23	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	1e-50	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]