PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01968g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 196aa    MW: 21552.4 Da    PI: 6.4769
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01968g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.9e-42381371100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+
  Peinf101Scf01968g00003.1  38 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARLRDPVYGCAGAICQLQK 122
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q+++l+a+la++++e
  Peinf101Scf01968g00003.1 123 QVNELQAQLAKAQAE 137
                               ***********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.01137138IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-4238135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEPSIITSSS SRSVSPSSSS SPPNSPTTQP RAVVVVSPCA ACKILRRRCA EKCVLAPYFP  60
PNDPIKFTTA HRVFGASNII KFLQELPEYQ RADAVSSMVY EANARLRDPV YGCAGAICQL  120
QKQVNELQAQ LAKAQAEVVN MQCQQANLMA LICMEIDQSP QSSPPPQQSL DNFTNNIPHF  180
FDDNNNFGSA WETLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-433714510118LOB family transfactor Ramosa2.1
5ly0_B2e-433714510118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-52HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755182e-52HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593636.11e-101PREDICTED: LOB domain-containing protein 1-like
RefseqXP_016487519.11e-101PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR02e-72LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4BF481e-99A0A1S4BF48_TOBAC; LOB domain-containing protein 1-like
STRINGXP_009593636.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-65LOB domain-containing protein 1