PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02008g00027.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 335aa    MW: 37458.8 Da    PI: 6.1874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02008g00027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-19321151099
                               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                        B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                  s+++ lp +fa+ +++   ++++  led+sg++W+v++  +++sg+  +++GW  F++++gL +gD +vF++++ + f   v
  Peinf101Scf02008g00027.1  32 KEFSKIMFLPPRFARLNSNL--TNRKTYLEDSSGQQWRVTV--CNHSGSLAIQEGWPIFCSEHGLGVGDLLVFHYVQGQHF--IV 110
                               4445679*******999655..45589**************..********************************987777..99 PP

                               EEE-S CS
                        B3  95 kvfrk 99 
                               ++f +
  Peinf101Scf02008g00027.1 111 QIFGH 115
                               99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2121118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-2021118IPR015300DNA-binding pseudobarrel domain
CDDcd100179.12E-1924113No hitNo description
SMARTSM010198.4E-1325116IPR003340B3 DNA binding domain
PfamPF023622.7E-1725114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.64738116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MECENEACDE CKRNCQLIHG KRDSFFKMMI GKEFSKIMFL PPRFARLNSN LTNRKTYLED  60
SSGQQWRVTV CNHSGSLAIQ EGWPIFCSEH GLGVGDLLVF HYVQGQHFIV QIFGHTGCEK  120
ITHPSDICKG QKRARTYPEA TSQDELLQTT DISSTNKKSK TYSASESEKV IHQSHITKFA  180
PNIDANSGKG KLVHPAVNVD ESFCMIDRDG QCDQGDDRLC LHLSSFEMPA SKPLAEGTDS  240
LLKGDNGSSN HVEANLRIQA EELSPTFDSE ILRNDKIIGR PVEDIPPLSQ KDENDRSTNV  300
MSSSFLKPAE NSSRSDDLSN INKHQNPRMS TFESG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461995.11e-156PREDICTED: uncharacterized protein LOC107785253 isoform X4
TrEMBLA0A1S3ZC161e-154A0A1S3ZC16_TOBAC; uncharacterized protein LOC107785253 isoform X4
STRINGXP_009616981.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-09B3 family protein