PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02008g02036.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 849aa    MW: 94164 Da    PI: 8.3393
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02008g02036.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.55.3e-21757837186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               rW+++e+++Li++r e+++r++  + +++lWee+s+++ + g+ rsp qCk+ w +l ++y++ k  ek+     ++++pyf+++
  Peinf101Scf02008g02036.1 757 RWKHEEIMKLIKLRGELHSRFQVVRGRMALWEEISSNLLSSGVDRSPAQCKSLWASLVQKYEESKSDEKS-----QEKWPYFEEM 836
                               8********************************************************************8.....478******9 PP

                  trihelix  86 e 86 
                                
  Peinf101Scf02008g02036.1 837 S 837
                               6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.8E-6775325IPR001279Metallo-beta-lactamase
SuperFamilySSF562813.45E-7276490IPR001279Metallo-beta-lactamase
SMARTSM008491.9E-2588285IPR001279Metallo-beta-lactamase
PfamPF007532.0E-1089234IPR001279Metallo-beta-lactamase
PfamPF075212.6E-7433462IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.293750814IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.5E-5751816IPR009057Homeodomain-like
PfamPF138371.6E-17755838No hitNo description
CDDcd122036.54E-22756821No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MAAFSAISLC PYKLCHQLNP TKRYISCYTP SSSVGVRGSR GPRRRPPKTE GAGRSIDDSV  60
QRRMEQFYEG TDGPPLRVLP IGGLGEIGMN CMLVGNYDRY ILIDAGVMFP GYDELGVQKI  120
IPDTTFIKKW SHKIEAVVIT HGHEDHIGAL PWVIPALDSH TPIFASSFTM ELIKKRLKEF  180
GIFVPSRLKV FKTRRKFTAG PFEVEPITVT HSIPDCSGIV LRCSDGTILH TGDWKIDESP  240
LDGKVFDREA LEELSKEGVT LMMSDSTNVL SPGRTLSETV VADSLLRRIS AAKGRVITTQ  300
FASNIHRLGS VKAAADLTGR KLVFVGMSLR TYLDAAWKDG KAPIDPSTLV KVEDIDAYAP  360
KDLLIVTTGS QAEPRAALNL ASYGSSHSLK LNKEDLVLYS AKVIPGNETR VMKMLNRISD  420
IGSTIVMGKN ELLHTSGHAH REELEEVLKI VKPQHFLPVH GELLFLKEHE VLGRSTGIRH  480
TAVIKNGEML GISHLRNRKV LSNGYISLGK ENLQLMYSDG DKAFGTATEL CIDERQRIAS  540
DGIIVASMEI LRPQSTDGMT EKTLKGKIRI TTRCLWLDKG KLLDALHKAA HAALSSCPLN  600
CPLPHMERTV SEVLRKMVRK YSSKRPEVIV VAVENPAGVL ADEINGKLSG KSHVGFGISE  660
LRNGMDGDKK KRQASEARAE EGNGHAYPID DAPEQVEGDD MDIERLMHGG ATTSSSTSLD  720
EYPPTEAESE MTRKESIQID SGFPQSMEKS SKLKRNRWKH EEIMKLIKLR GELHSRFQVV  780
RGRMALWEEI SSNLLSSGVD RSPAQCKSLW ASLVQKYEES KSDEKSQEKW PYFEEMSKIL  840
SDLEATTQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A7e-897663419560RIBONUCLEASE J
5a0t_B7e-897663419560RIBONUCLEASE J
5a0v_A7e-897663419560RIBONUCLEASE J
5a0v_B7e-897663419560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-134HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351477.10.0PREDICTED: ribonuclease J
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A1J6J4H10.0A0A1J6J4H1_NICAT; Uncharacterized protein
STRINGSolyc03g111260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58742331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]