PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02008g04001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 537aa    MW: 59775.2 Da    PI: 6.8695
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02008g04001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3811.4e-1161645361374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalk 82 
                               lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++La rla  +  +++  +++ + ++++   +++  al+
  Peinf101Scf02008g04001.1 164 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFMQGLADRLALvQPLGTVGYIATPAMNKTDiaLEKKEEALR 248
                               689**************************************************9844445555555555555556688899999* PP

                      GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetg 162
                               l++e++P ++f+h++aN+ Ilea+ege+ +H++D+++s    qG QW  L+q+La+Rp++pp +lRiT+vg+      e+ + +g
  Peinf101Scf02008g04001.1 249 LLYEICPHIQFGHFVANSSILEAFEGESFIHVVDLGMSiglpQGHQWRRLIQSLANRPGQPPrRLRITAVGQ----TIEKFQVMG 329
                               **********************************99874455889*************877779********....99******* PP

                      GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                               + L+ +A +lg+++ef++ v+++le+l++++++v  gE+l+Vn++lqlh +++es    +   +vL+++ +lsPk++v+veq+++
  Peinf101Scf02008g04001.1 330 DELEAYAGSLGINLEFSA-VESNLENLKPKDIKVYDGEVLVVNSILQLHCVVKESRGALN---SVLQVIHELSPKILVLVEQDSS 410
                               ******************.79*******************************88877777...8********************* PP

                      GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                               hn++ Fl rf+eal+yysa+fdsl++ lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  
  Peinf101Scf02008g04001.1 411 HNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK-- 493
                               *********************************************************************************96.. PP

                      GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               + +qak  l+kv+  +g+++ ee+g+lvlgWk++p+v++S+W+
  Peinf101Scf02008g04001.1 494 MLSQAKQWLAKVNaYEGFTITEEKGCLVLGWKSKPIVAASCWK 536
                               799**********9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.261138517IPR005202Transcription factor GRAS
PfamPF035144.9E-114164536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MTYDMVTGFL SLEPCSGDQI GYEPLEHGLY LSHKELAYSL NPYTAVLKRN AASMISILSN  60
ESGDFKRLRR TTSLGESFGS NISSFYSSDS SSSSSHGSSI PRNGSTNSVN SLSLTPRRHF  120
RDHVWALNQR YLAAEAIEEA ASDIIGSERR GCDEDQENGE GMKLVQLLIT CAEAVACRDK  180
SRASVLLSEL RASALVFGTS FQRVASCFMQ GLADRLALVQ PLGTVGYIAT PAMNKTDIAL  240
EKKEEALRLL YEICPHIQFG HFVANSSILE AFEGESFIHV VDLGMSIGLP QGHQWRRLIQ  300
SLANRPGQPP RRLRITAVGQ TIEKFQVMGD ELEAYAGSLG INLEFSAVES NLENLKPKDI  360
KVYDGEVLVV NSILQLHCVV KESRGALNSV LQVIHELSPK ILVLVEQDSS HNGPFFLGRF  420
MEALHYYSAI FDSLDVMLPK YDTRRAKIEQ FYFAEEIKNI VSCEGPARVE RHERVDQWRR  480
RMSRAGFQAA PIKMLSQAKQ WLAKVNAYEG FTITEEKGCL VLGWKSKPIV AASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-621465351378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603492.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_016441386.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S3XN640.0A0A1S3XN64_TOBAC; DELLA protein RGL1-like
STRINGXP_009603492.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.17e-77GRAS family protein