PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02008g05051.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 22279.7 Da    PI: 10.2387
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02008g05051.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien++ rqvtfskRr+g+lKKA+ELS+LCdaeva++ifs++gk+y ++s
  Peinf101Scf02008g05051.1  9 KRIENQTSRQVTFSKRRTGLLKKAFELSILCDAEVALLIFSPSGKFYQFAS 59
                              79***********************************************86 PP
2K-box62.31.9e-2182160987
                     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                               +  + +e +++e++ +++ i++L+   +h+ GedL+sL +keL+qLe+qL  +++++R+kK +++ e+i+ l+++ + +
  Peinf101Scf02008g05051.1  82 QGLRAMEVWRTEIDGMRRTIDELEARDKHFAGEDLSSLGMKELKQLERQLRIGVERVRAKKRRIISEHINCLKRRVRLH 160
                               55667899*****************9************************************************98755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.7E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.282161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-31275IPR002100Transcription factor, MADS-box
CDDcd002653.56E-39271No hitNo description
PRINTSPR004044.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-1886158IPR002487Transcription factor, K-box
PROSITE profilePS5129711.27387183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRGKVQLKR IENQTSRQVT FSKRRTGLLK KAFELSILCD AEVALLIFSP SGKFYQFASN  60
DIDRTILRYK NEVGLLSKTN DQGLRAMEVW RTEIDGMRRT IDELEARDKH FAGEDLSSLG  120
MKELKQLERQ LRIGVERVRA KKRRIISEHI NCLKRRVRLH ELREVEGSSV ILDSDASELL  180
SKHCTTICDR QY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-24169169MEF2 CHIMERA
6byy_B2e-24169169MEF2 CHIMERA
6byy_C2e-24169169MEF2 CHIMERA
6byy_D2e-24169169MEF2 CHIMERA
6bz1_A2e-24169169MEF2 CHIMERA
6bz1_B2e-24169169MEF2 CHIMERA
6bz1_C2e-24169169MEF2 CHIMERA
6bz1_D2e-24169169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485764.11e-102PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A1S4BA711e-101A0A1S4BA71_TOBAC; truncated transcription factor CAULIFLOWER D-like isoform X1
STRINGPGSC0003DMT4000393132e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-45AGAMOUS-like 19