PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02030g00008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

YABBY

Protein Properties

Length: 185aa MW: 20844.9 Da PI: 8.8557

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02030g00008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	189.2	2.1e-58	6	164	4	167
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 + +seq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q l+ +s ++++++ ++ + e ++ ++ Peinf101Scf02030g00008.1 6 DVASEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSNSSASSQNFHHVQVPNYTAPEYRMDLGSST 90 5689************************************************9999988888888888888888888888888 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + ++++ + + +++n++e v v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aakn a ++h Peinf101Scf02030g00008.1 91 KCNNMRMTMRTPITNNTQERV-----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNGAEKCPMH 164 777777777777777766665.....59*****************************************99887777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.0E-62	8	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.06E-6	103	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MASCIDVASE QLCYIPCNFC NIVLAVSVPC SNLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 NSSASSQNFH HVQVPNYTAP EYRMDLGSST KCNNMRMTMR TPITNNTQER VVNRPPEKRQ 120 RVPSAYNQFI KEEIQRIKAN NPDISHREAF STAAKNGAEK CPMHKLLRKI KKSSVYGEYF 180 LQAVC

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	1e-149	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622268.1	2e-96	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	6e-69	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A068FJR2	4e-95	A0A068FJR2_9SOLN; YAB5 protein
TrEMBL	A0A1S3Y3Q8	5e-95	A0A1S3Y3Q8_TOBAC; axial regulator YABBY 5-like
STRING	XP_009622268.1	6e-96	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-65	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]