PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02055g00015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 209aa    MW: 23464.3 Da    PI: 8.3986
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02055g00015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.72.3e-44471461100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+
  Peinf101Scf02055g00015.1  47 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPIQQRADAVSSLVYEANARVRDPVYGCVGAISFLQN 131
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ql+ +la++++e
  Peinf101Scf02055g00015.1 132 QVSQLQMQLAVAQAE 146
                               **********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.83346147IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-4347144IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
VPNSFSSKLH FVLRIILLYI SLFLLIKEKF LFVPSCLCWH KMGGSSPCAS CKLLRRRCAK  60
DCIFAPYFPP DDPHKFAIVH KVFGASNVSK MLQELPIQQR ADAVSSLVYE ANARVRDPVY  120
GCVGAISFLQ NQVSQLQMQL AVAQAEILCI QMQHEPVSLP TTLIEPDEKS PFSTSNATNN  180
FNNLQQYLTF ASSSTSVMQD TVKRESLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-50431607127LOB family transfactor Ramosa2.1
5ly0_B2e-50431607127LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754454e-63HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755184e-63HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063413.12e-98LOB domain-containing protein 12-like
RefseqXP_027109200.12e-98LOB domain-containing protein 12
RefseqXP_027150317.12e-98LOB domain-containing protein 12
SwissprotQ8LBW34e-76LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A068ULU35e-97A0A068ULU3_COFCA; Uncharacterized protein
STRINGXP_009760471.11e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-77LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]