PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02063g00011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YC
Protein Properties Length: 271aa    MW: 30635.3 Da    PI: 5.1759
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02063g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.42.9e-177861998
                     NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                              +++  arikki++adedv +i+  +P l+ska elf+ +l   ++  + +   +t++   ++++v++ ++fdfl d+v r
  Peinf101Scf02063g00011.1  7 TRFRAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCEHTYDITLKRGAKTMNSFHLKQCVKSLNVFDFLKDVVSR 86
                              567789***********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-24272IPR009072Histone-fold
PfamPF008082.9E-16971IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.83E-191887IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKKRLDTRFR AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCEHT YDITLKRGAK  60
TMNSFHLKQC VKSLNVFDFL KDVVSRVPDL SGAESTTKRR SVNLKVAEDD NDSDDNIKRS  120
NMNETSHTNG SGRGRGRGRG RGRGKCGRAL EGESNGKCEN FEDHVDVQKQ SVKRLHNMTE  180
LVDTENITCG KNPEVPVRNF DLNVDLNEST DPTEILLEAQ PSLSTNPLET KHEEYMGWSP  240
SEMEKMAIDP IQFATLSRRL DEEEEDYDEE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-21271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132144RGRGRGRGRGRGK
2134143RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797323.14e-97PREDICTED: dr1-associated corepressor-like isoform X1
RefseqXP_019236573.14e-97PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBLA0A1J6KDL31e-95A0A1J6KDL3_NICAT; Uncharacterized protein
TrEMBLA0A1U7Y2F61e-95A0A1U7Y2F6_NICSY; dr1-associated corepressor-like isoform X1
STRINGXP_009797323.12e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.15e-56NF-YC family protein