PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02122g01022.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 167aa MW: 19087 Da PI: 9.9497

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02122g01022.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.2	9.6e-51	14	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 ppG+rFhP+deel+v+yL +kv++++l++ +i+ev++y+++PwdLp+ + +e+ew+fFs+rd+ky++g r+nr+t+sgyWkat Peinf101Scf02122g01022.1 14 PPGVRFHPSDEELIVHYLLNKVNSHPLPA-AIIAEVELYNYNPWDLPRLALFGEDEWFFFSPRDRKYPNGVRPNRTTSSGYWKAT 97 9**************************.88***********76667899************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk++ls+ g+ +g+kk Lvfy+g+apkg+ktdW+m eyrl Peinf101Scf02122g01022.1 98 GTDKPILSSIGSRIGVKKALVFYTGKAPKGVKTDWIMIEYRL 139 *****99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-57	7	144	IPR003441	NAC domain
PROSITE profile	PS51005	51.879	13	158	IPR003441	NAC domain
Pfam	PF02365	5.3E-26	14	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MAPFETPLSS FHFPPGVRFH PSDEELIVHY LLNKVNSHPL PAAIIAEVEL YNYNPWDLPR 60 LALFGEDEWF FFSPRDRKYP NGVRPNRTTS SGYWKATGTD KPILSSIGSR IGVKKALVFY 120 TGKAPKGVKT DWIMIEYRLP DRAIQPSRSA VSMRVSLIIN HLLFLNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-62	7	167	14	169	NAC domain-containing protein 19
3swm_B	1e-62	7	167	14	169	NAC domain-containing protein 19
3swm_C	1e-62	7	167	14	169	NAC domain-containing protein 19
3swm_D	1e-62	7	167	14	169	NAC domain-containing protein 19
3swp_A	1e-62	7	167	14	169	NAC domain-containing protein 19
3swp_B	1e-62	7	167	14	169	NAC domain-containing protein 19
3swp_C	1e-62	7	167	14	169	NAC domain-containing protein 19
3swp_D	1e-62	7	167	14	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108046.1	1e-85	NAC domain-containing protein 102-like
Swissprot	Q8GY42	4e-66	NAC25_ARATH; NAC transcription factor 25
Swissprot	Q8H4S4	4e-66	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A068UFT8	1e-83	A0A068UFT8_COFCA; Uncharacterized protein
STRING	XP_006488646.1	1e-77	(Citrus sinensis)
STRING	XP_006424612.1	1e-77	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-68	NAC domain containing protein 25

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]