PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02138g02031.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SBP

Protein Properties

Length: 185aa MW: 20888.4 Da PI: 9.1093

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02138g02031.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.4	8.8e-43	73	150	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dls ak+yh+rhkvCevh+kap vlv+gl+qrfCqqCsrfhelsefD +krsCrrrLa+hnerrrk+++ Peinf101Scf02138g02031.1 73 CCQVEKCGTDLSYAKTYHKRHKVCEVHAKAPIVLVAGLRQRFCQQCSRFHELSEFDGTKRSCRRRLAGHNERRRKTSQ 150 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.9E-35	67	135	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.248	71	148	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.89E-39	72	151	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-33	74	147	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MFNFKKSMAT YNHAATRDLA DEGEDTEVED EEDEGLELID DKSRLKRKKL NLAKGAVKEG 60 ANSYGGGGVA QPCCQVEKCG TDLSYAKTYH KRHKVCEVHA KAPIVLVAGL RQRFCQQCSR 120 FHELSEFDGT KRSCRRRLAG HNERRRKTSQ GTKLEDNQCR QINGEGTPKL TFSSSNTSLK 180 NYQIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-35	74	147	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT717964	1e-122	KT717964.1 Petunia x hybrida squamosa promoter-binding protein 2 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788885.1	1e-66	PREDICTED: squamosa promoter-binding-like protein 3
Refseq	XP_016481940.1	1e-66	PREDICTED: squamosa promoter-binding-like protein 3
Swissprot	Q38740	3e-46	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A2K9ZXH7	1e-106	A0A2K9ZXH7_PETHY; Squamosa promoter binding-like protein 4c
STRING	XP_009788885.1	5e-66	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	1e-40	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]