PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02160g04021.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 543aa MW: 59889.6 Da PI: 7.3003

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02160g04021.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.6	1.4e-29	246	305	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ +d ++++i Yeg+Hnh+ Peinf101Scf02160g04021.1 246 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCIQDMSILIISYEGTHNHS 305 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-30	232	307	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	239	307	IPR003657	WRKY domain
PROSITE profile	PS50811	27.232	241	307	IPR003657	WRKY domain
SMART	SM00774	2.8E-34	246	306	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	247	304	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MEAAFRKSIH GDLVKVEKRN KGESSSSDEE RCAEDNINVL KVGKESKVHE DDHSKSPQQK 60 DLPSDKEDDQ LESVKADMEE VMEENQRLRM HLDRIMKDYH NLQRQFHGIA QKDAEKSNSP 120 VNNRYECDEA ELVSLSLGRT SSSETKKEEL SNIISKDHLE KEEKGGLALG LGCKFEPSSK 180 ISKESSPAKL SPENSLGEVK DEKAGETWPP QRNPKTMRNE ENDVSQQNPA KRAKVSIRVR 240 CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPSCPV RKQVQRCIQD MSILIISYEG 300 THNHSLPLSA TAMAFTTSAA ASMLLSGSSS SSASAPNNLP PTNTSTNING LNFYLSDTSK 360 PNQFYLPNPS MISSNSSSQH PTITLDLTST SSTSLMSSQN NRMNSYSYPP RHSANSTNLN 420 FSSLESNYLS FGTRPDQEHI NLFQSYLQNN IVKPTQSFQQ DTIAAATKAI TSDPKFQSAL 480 AVALTSMIGS GGGNQGGIEE KSGQSLKVTE PFPVLCSFPS TSLQFAASKD KSTSPVDKKD 540 YRL

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MEAAFRKSIH GDLVKVEKRN KGESSSSDEE RCAEDNINVL KVGKESKVHE DDHSKSPQQK  60
DLPSDKEDDQ LESVKADMEE VMEENQRLRM HLDRIMKDYH NLQRQFHGIA QKDAEKSNSP  120
VNNRYECDEA ELVSLSLGRT SSSETKKEEL SNIISKDHLE KEEKGGLALG LGCKFEPSSK  180
ISKESSPAKL SPENSLGEVK DEKAGETWPP QRNPKTMRNE ENDVSQQNPA KRAKVSIRVR  240
CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPSCPV RKQVQRCIQD MSILIISYEG  300
THNHSLPLSA TAMAFTTSAA ASMLLSGSSS SSASAPNNLP PTNTSTNING LNFYLSDTSK  360
PNQFYLPNPS MISSNSSSQH PTITLDLTST SSTSLMSSQN NRMNSYSYPP RHSANSTNLN  420
FSSLESNYLS FGTRPDQEHI NLFQSYLQNN IVKPTQSFQQ DTIAAATKAI TSDPKFQSAL  480
AVALTSMIGS GGGNQGGIEE KSGQSLKVTE PFPVLCSFPS TSLQFAASKD KSTSPVDKKD  540
YRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-18	246	307	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616443.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	0.0	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A1S4B0U8	0.0	A0A1S4B0U8_TOBAC; probable WRKY transcription factor 61
STRING	XP_009616443.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-48	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]