PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02206g05026.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 245aa MW: 28075.4 Da PI: 8.3819

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02206g05026.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.1	8.1e-20	65	150	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 Yn+YA GF vrk +++++ rn+e t+ f Cs+egk+ e+++ +++ r+r r+gC a++k k + +g+wev ++ eHn Peinf101Scf02206g05026.1 65 AYNSYAVAKGFGVRKGAKTYN-RNNELTRCLFLCSCEGKSPENSNY-QERLRQRLGYRCGCMARIKFKIS-NGVWEVFEICDEHN 146 5**************9999.5556************9999.99999************99.************ PP FAR1 87 Hela 90 H++ Peinf101Scf02206g05026.1 147 HPMI 150 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-16	65	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
KSNHQILYSN AMEASLASNK NFVYEDLNVN DQDCPAVVHT VSNINNDFAF KIGMKFNTED 60 ESYEAYNSYA VAKGFGVRKG AKTYNRNNEL TRCLFLCSCE GKSPENSNYQ ERLRQRLGYR 120 CGCMARIKFK ISNGVWEVFE ICDEHNHPMI EENLRHFIPS GRKLTELKPK TEQRKKRAPQ 180 KIFKARATEQ HDQESSRLSF ELYGDSNTSF TQLLSQASAN QLGGCIENQN SLIRKKNIDF 240 GGQEN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019266793.1	1e-79	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S3ZUA7	9e-75	A0A1S3ZUA7_TOBAC; Uncharacterized protein
STRING	XP_009628526.1	2e-76	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	4e-14	FAR1-related sequence 10