PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02232g00005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 27201.9 Da PI: 8.3605

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02232g00005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	75	129	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Peinf101Scf02232g00005.1 75 RKKLRLTKEQSIILEESFKEHSTLNPKQKLTLAKRLGLRPRQVEVWFQNRRARTK 129 678899***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	4.2E-14	2	43	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	7.8E-18	59	125	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-19	66	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.086	71	131	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	73	135	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-16	75	129	IPR001356	Homeobox domain
CDD	cd00086	4.59E-15	75	132	No hit	No description
PRINTS	PR00031	2.3E-5	102	111	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	106	129	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.3E-5	111	127	IPR000047	Helix-turn-helix motif
SMART	SM00340	2.3E-24	131	174	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	7.9E-11	131	165	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
METRSFLKGI DVNRVADTEE EAGVSSPNST ISTVSGNKRN EREANYCEDN MIEMERACSR 60 GGIINSDEED GETCRKKLRL TKEQSIILEE SFKEHSTLNP KQKLTLAKRL GLRPRQVEVW 120 FQNRRARTKL KQTEVDYEFL KRCVENLTEE NRRLQKEVQE LRGLKRSPQF YMQMTPPTTL 180 TMCPSCELVA SGPTNTPVNI GPQQLGPSQQ QPMPFNLWAT TPIPQGPLDS YPLLGRQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	131	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019228499.1	1e-131	PREDICTED: homeobox-leucine zipper protein HAT4-like isoform X1
Swissprot	P46602	2e-82	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A314KNB1	1e-130	A0A314KNB1_NICAT; Homeobox-leucine zipper protein hat4
STRING	Solyc06g060830.2.1	1e-126	(Solanum lycopersicum)
STRING	XP_009788263.1	1e-126	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1118	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-84	homeobox-leucine zipper protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]