PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02242g01031.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 353aa    MW: 41305.4 Da    PI: 9.6362
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02242g01031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16261061598
                               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                 ++p kf+++ + +++   + +l+ +sg+sW+v++  r  ++ yv+ +GW+ Fvk+++L++ D +vF++dg s+f  +v++f+
  Peinf101Scf02242g01031.1  26 FKRIPHKFVTNLKDSHKLLGQKILKGPSGNSWKVEV-KRTEDDDYVFCNGWELFVKDHNLEAEDLLVFRMDGFSSF--NVMIFD 106
                               458******887655566667788************.3555555*************************9887999..888887 PP
2B372.17.1e-23239319487
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               v++++ +  +g+l lpk fae++ ++  +s t+ l++ +sgr+Wev +  r+++++ v+++GW++Fv +n+L+e D++vF+l + 
  Peinf101Scf02242g01031.1 239 VTMQPTHVDRGQLKLPKGFAEKYTKN--QSETINLTTpSSGRTWEVSV--RRRQEGLVMQTGWEDFVMDNNLEEYDICVFELAQG 319
                               445666677788***********866..7889*****7788*******..*******************************8853 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.6E-616108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-1823110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-1823113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-1524106No hitNo description
PfamPF023623.8E-1425106IPR003340B3 DNA binding domain
PROSITE profilePS5086312.57629108IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-22234335IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-25235336IPR015300DNA-binding pseudobarrel domain
CDDcd100173.67E-18235335No hitNo description
PROSITE profilePS5086314.734236337IPR003340B3 DNA binding domain
SMARTSM010192.5E-20237337IPR003340B3 DNA binding domain
PfamPF023625.1E-20239320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MATICERCKE LEKKKYWKKC NKQQFFKRIP HKFVTNLKDS HKLLGQKILK GPSGNSWKVE  60
VKRTEDDDYV FCNGWELFVK DHNLEAEDLL VFRMDGFSSF NVMIFDLTAC EKEDTFFVKK  120
QRNPCKHQAE VIDDGTSEQE SSENDEHLND SKEQQSYGKH YLFHLPEPRK GKKLKKILIA  180
KQEKRKRKCT PLSSSCKKKM KSEEKRHMFS NRRLVTQKER IKVLQMASKH ISFVPSFLVT  240
MQPTHVDRGQ LKLPKGFAEK YTKNQSETIN LTTPSSGRTW EVSVRRRQEG LVMQTGWEDF  300
VMDNNLEEYD ICVFELAQGG KHNSKPVVLD VYIFRAVDEI MRQSSSNSTS IVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338757.11e-159PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A0V0I0F91e-158A0A0V0I0F9_SOLCH; Putative B3 domain-containing protein REM16-like
STRINGXP_009631052.11e-157(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-28B3 family protein