PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02246g01003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 170aa    MW: 18582.2 Da    PI: 7.0813
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02246g01003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.31.1e-37111121100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                               +C aCk+lrrkC ++C++apyf ++q  + +fa+vhk+FGasn +kll ++p ++r +++ +l+yeA ar+rdPvyG+vg+i++l
  Peinf101Scf02246g01003.1  11 PCGACKFLRRKCMRGCIFAPYFDSSQqgMVHFAAVHKVFGASNASKLLLSTPANKRLETVVTLCYEALARVRDPVYGSVGHIFTL 95 
                               7*********************88773459******************************************************* PP

                    DUF260  84 qqqleqlkaelallkee 100
                               qqq+ +l+aela+++++
  Peinf101Scf02246g01003.1  96 QQQVVTLQAELAYVQAR 112
                               *************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.33810113IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-3611110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MNSSGYDGGG PCGACKFLRR KCMRGCIFAP YFDSSQQGMV HFAAVHKVFG ASNASKLLLS  60
TPANKRLETV VTLCYEALAR VRDPVYGSVG HIFTLQQQVV TLQAELAYVQ ARLSNLQHVN  120
YMPPESSLTD LQSASSNISS VCMDPLVNII TGLSDHVLDQ PLENYDVHIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3481068104LOB family transfactor Ramosa2.1
5ly0_B5e-3481068104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604914.11e-76PREDICTED: LOB domain-containing protein 19-like
RefseqXP_009789949.11e-76PREDICTED: LOB domain-containing protein 19
RefseqXP_016441663.11e-76PREDICTED: LOB domain-containing protein 19-like
SwissprotO813225e-56LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S3XP113e-75A0A1S3XP11_TOBAC; LOB domain-containing protein 19-like
TrEMBLA0A1U7XST23e-75A0A1U7XST2_NICSY; LOB domain-containing protein 19
STRINGXP_009789949.14e-76(Nicotiana sylvestris)
STRINGXP_009604914.15e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-58LOB domain-containing protein 31