PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02263g04023.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 234aa MW: 26105.8 Da PI: 7.3958

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02263g04023.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.4	3.1e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C l+p++ p++q++++ +++k++G++ +++l++a p++ r+d+++sl+yeA+ r+ +Pv+G+vg++ Peinf101Scf02263g04023.1 4 SCNGCRVLRKGCSENCSLRPCLqwiksPDSQANATVFLAKFYGRAGLINLINAGPDHLRPDIFKSLLYEACGRIINPVHGSVGLM 88 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelallk 98 ++++q +q+++e++ + Peinf101Scf02263g04023.1 89 CSGNWQRCQEAVEAVFKG 106 *********9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.492	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS LRPCLQWIKS PDSQANATVF LAKFYGRAGL INLINAGPDH 60 LRPDIFKSLL YEACGRIINP VHGSVGLMCS GNWQRCQEAV EAVFKGSTIM EFPINNEEDS 120 TSQEVPHQII PFKGCDIRHL SKNSSGQVHE VKIRNRFKRK ATKADKVYVP VVAEEYLTNE 180 PSKFSITGWD FGQIEDALKR APSHDSFSVE TVEPSLVNCA EPVLPVKLEE VGHE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016463602.1	1e-126	PREDICTED: LOB domain-containing protein 40-like
Swissprot	Q9M886	3e-68	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1S3ZH71	1e-125	A0A1S3ZH71_TOBAC; LOB domain-containing protein 40-like
STRING	XP_009777707.1	1e-125	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-70	LOB domain-containing protein 41