PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02288g04004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 456aa    MW: 52133.9 Da    PI: 6.5798
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02288g04004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.96.4e-24104207186
                  trihelix   1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                               +Wt+++v++Li ++ ++++++++++                 +kk++W++vs++m ergf +sp+qC++k+++lnkryk+++++ 
  Peinf101Scf02288g04004.1 104 KWTDNMVRLLIMVVYYIGDEVGNNNnivdsngkkkgggvgvlQKKGKWKSVSRAMLERGFYVSPQQCEDKFNDLNKRYKRVNDIL 188
                               7*********************9877888899999************************************************** PP

                  trihelix  69 kkr.tsessstcpyfdqle 86 
                               +k+ +++++++ ++++ ++
  Peinf101Scf02288g04004.1 189 GKGtACRVVENQSLLETMD 207
                               ***55***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.3E-21102233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSHGMLGLEM SLHHHIPQQN PHHPMQQHPT HPHSQPPPHP IVSYQETENQ QQTLRQGFPF  60
GNNKAKNQSL TFSDDEETGP GISADNNSNG DDGKRKNCPW QRMKWTDNMV RLLIMVVYYI  120
GDEVGNNNNI VDSNGKKKGG GVGVLQKKGK WKSVSRAMLE RGFYVSPQQC EDKFNDLNKR  180
YKRVNDILGK GTACRVVENQ SLLETMDHLS TKMKEEVKKL LNSKHLFFRE MCAYHNSCGH  240
GNGTTSGGAG ASGGIVQHSP EVVAEANSQQ RCLHSSQNAK MPKGDEELDD DEDDDDDDDD  300
HDDDDEVSGA RGQDHHSDEH DDDVDERSRK RQRKMGSLSS PMVQQLSVEM VNVIQDGGRS  360
SIEKRQWLKT RLVQLEEQHV SYLCQAFELQ KQRLKWEKFT SKKEREMEKE KLINERKKLE  420
NERMVLLLRQ KELELLDFHQ HHPNYNKNSD PSSITG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754488e-94HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755218e-94HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513409.10.0PREDICTED: ESF1 homolog, partial
TrEMBLA0A1S4DJE60.0A0A1S4DJE6_TOBAC; ESF1 homolog
STRINGXP_009788508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-97sequence-specific DNA binding transcription factors