PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02312g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 399aa MW: 44470.8 Da PI: 6.6892

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02312g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.3e-08	316	356	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Peinf101Scf02312g00003.1 316 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 356 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.237	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-14	313	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	313	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-12	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-5	316	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.41E-4	329	361	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MESLDWDETP VNFGAAFDPI HVISNWNMPQ RQEAAIRLAA DSLAAKSGAD LSRNSTDQMG 60 FYSSPILNMP YINDNNSMTT SGLMSNFSSN GLQAIKPATI GASTGLLSSG SLESLDCLLS 120 ATTTNNTDTS IEDDDDMSMI FADSKNLWPN FNTGNNNAVS SRESHDKPIN VKENNKITCP 180 VYEVDEPVSR DHKYNKRSRD EALLEPSRNS FNLVQSNLSN ADCGNFQLIS EKQLPKSNKK 240 PRTENYKRPS SSNINFQQMS SSASSIEEPD PEAIAQMKEM IYRAAAFRPV NFGTEVLERP 300 KRKNVKISSD PQTVAARQRR ERISERIRVL QRLVPGGSKM DTASMLDEAA NYLKFLRSQV 360 KALEALGQKP DLMPFNYPLI PMQTHFPLQN PNPIHRPKS

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MESLDWDETP VNFGAAFDPI HVISNWNMPQ RQEAAIRLAA DSLAAKSGAD LSRNSTDQMG  60
FYSSPILNMP YINDNNSMTT SGLMSNFSSN GLQAIKPATI GASTGLLSSG SLESLDCLLS  120
ATTTNNTDTS IEDDDDMSMI FADSKNLWPN FNTGNNNAVS SRESHDKPIN VKENNKITCP  180
VYEVDEPVSR DHKYNKRSRD EALLEPSRNS FNLVQSNLSN ADCGNFQLIS EKQLPKSNKK  240
PRTENYKRPS SSNINFQQMS SSASSIEEPD PEAIAQMKEM IYRAAAFRPV NFGTEVLERP  300
KRKNVKISSD PQTVAARQRR ERISERIRVL QRLVPGGSKM DTASMLDEAA NYLKFLRSQV  360
KALEALGQKP DLMPFNYPLI PMQTHFPLQN PNPIHRPKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	321	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343023.1	1e-158	PREDICTED: transcription factor bHLH87
Refseq	XP_006343024.1	1e-158	PREDICTED: transcription factor bHLH87
Refseq	XP_019244073.1	1e-157	PREDICTED: transcription factor bHLH87-like
Refseq	XP_019244074.1	1e-157	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	1e-79	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1J6J2T1	1e-156	A0A1J6J2T1_NICAT; Transcription factor bhlh87
TrEMBL	M0ZRC9	1e-157	M0ZRC9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400006453	1e-157	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	7e-67	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]