PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02312g04048.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 256aa    MW: 27404.7 Da    PI: 4.16
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02312g04048.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA421.3e-13229256128
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGl 28 
                               C +C + kTp+WR gp g+ktLCnaCG+
  Peinf101Scf02312g04048.1 229 CLHCASEKTPQWRTGPLGPKTLCNACGV 256
                               99************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0033223256IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347223256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-10225256IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.6E-10225256No hitNo description
CDDcd002021.49E-9228255No hitNo description
PfamPF003202.7E-11229256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEAPEFFVNG YFSNAVDEQN NNNNNNNNFT VDDLLDFPKE DDVMTDAFFD SITGNNSADS  60
STVTVVDSCN SSVSGGDGNF NGNLSCRSFT DAPFPSSELC VPYDDLAELE WLSNFVEESF  120
SSDDIQNLQL IPVANINSTT NTTTDSSSSA TTGTTSPPAF PADTSVPGKA RSKRSRNAPC  180
DWSSRLQLLL SPATSSSESN NSASNTSFTG KVIKAPKKRE SVETPGRKCL HCASEKTPQW  240
RTGPLGPKTL CNACGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628152.11e-140PREDICTED: GATA transcription factor 12-like
TrEMBLA0A1S4A1G81e-138A0A1S4A1G8_TOBAC; GATA transcription factor
STRINGXP_009628152.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-32GATA transcription factor 12