PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02318g00040.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 332aa MW: 36937.9 Da PI: 7.0722

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02318g00040.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.9e-10	55	104	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rEr RRdr+N+ f eL l ++ +K++Ka+iL +v+ +k+L Peinf101Scf02318g00040.1 55 RKVQKADRERLRRDRLNEQFTELGNTLDPD----RPKNDKASILSDTVQMLKEL 104 5677889******************997....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-13	54	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.649	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-12	55	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-8	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-8	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDQLNHGGVY QSNHIPNNCL NQLSSDISMP PNGFHSESSS KRKPEAEPKG SFAARKVQKA 60 DRERLRRDRL NEQFTELGNT LDPDRPKNDK ASILSDTVQM LKELTAQVSK LKSEYAALTD 120 ESRELTQEKN DLREEKASLK SDIESLNVQY QQRVRAMYPW AGMDHSMVMH PPSYSYPVPV 180 PIPTGPVPMH PSMQPYPFFG NHNPAAVPNP CSSFVPYMTP NTLFEQHSAL HMSPINQPGS 240 MTRQGSRNKS SDQGESRIQK SEDSNEVATD LELKTPGSAS EQDLSSEQRK SARLSMKDSS 300 LTDGSSSSRC SSSHSVQAIS SNSIVRRTKT DD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	68	RLRRDR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240854	1e-164	AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence.
GenBank	AC240859	1e-164	AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence.
GenBank	HG975513	1e-164	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015058498.1	0.0	transcription factor bHLH121 isoform X1
Swissprot	Q9LT23	4e-93	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1S3XWY3	0.0	A0A1S3XWY3_TOBAC; transcription factor bHLH121-like
STRING	XP_009610672.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-80	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]