PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02318g06027.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SRS

Protein Properties

Length: 193aa MW: 21856.6 Da PI: 9.1369

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02318g06027.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	98.3	1.5e-30	6	81	3	76
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkr 76 s ++CqdCGn+akkdC++ RCRtCCksrgf+C+thvkstW+p++ rr r++ ++++ s+++ ++ + +a +++ Peinf101Scf02318g06027.1 6 SSYSRCQDCGNKAKKDCSFLRCRTCCKSRGFQCQTHVKSTWIPVSTRRPRHHFHHQQLSTTTIQQqqQLQAGPNPK 81 56679******************************************99865444433333333311222222222 PP
2	DUF702	73.2	7.8e-23	87	138	103	154
DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ ev+ +avfrc+rvssvd+ +++aYqt+v+igGhvfkGiLydqG+e+ Peinf101Scf02318g06027.1 87 HENQVEVNYPAVFRCIRVSSVDNVVDQFAYQTSVNIGGHVFKGILYDQGPEN 138 555679999*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.1E-50	9	137	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.3E-26	11	52	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.6E-22	92	136	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MIMMRSSYSR CQDCGNKAKK DCSFLRCRTC CKSRGFQCQT HVKSTWIPVS TRRPRHHFHH 60 QQLSTTTIQQ QQQLQAGPNP KRLRENHENQ VEVNYPAVFR CIRVSSVDNV VDQFAYQTSV 120 NIGGHVFKGI LYDQGPENHY NNNMAVESSS AFDQQQPPNL LAAASTSAPI SPPPTSYPSP 180 FSANFMPGTQ FFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	2e-34	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602229.1	3e-84	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016478329.1	3e-84	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	3e-50	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A1S4ANU4	6e-83	A0A1S4ANU4_TOBAC; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009602229.1	1e-83	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-43	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]